3H8M Transferase date Apr 29, 2009
title Sam Domain Of Human Ephrin Type-A Receptor 7 (Epha7)
authors J.R.Walker, L.Yermekbayeva, C.Butler-Cole, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Struct Genomics Consortium (Sgc)
compound source
Molecule: Ephrin Type-A Receptor 7
Chain: A, B
Fragment: Sam Domain, Residues 919-990
Synonym: Tyrosine-Protein Kinase Receptor Ehk-3, Eph Homolo 3, Receptor Protein-Tyrosine Kinase Hek11;
Ec: 2.7.10.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ehk3, Epha7, Hek11
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)V2r
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.071 54.089 40.455 90.00 104.84 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3h8m.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (3h8m.pdb2.gz) 26 Kb
  • CSU: Contacts of Structural Units for 3H8M
  • Likely Quarternary Molecular Structure file(s) for 3H8M
  • Structure Factors (122 Kb)
  • Retrieve 3H8M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H8M from S2C, [Save to disk]
  • Re-refined 3h8m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3H8M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3H8M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H8M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h8m_B] [3h8m] [3h8m_A]
  • SWISS-PROT database: [Q15375]
  • Domain organization of [EPHA7_HUMAN] by SWISSPFAM
  • Domain found in 3H8M: [SAM ] by SMART
    • Other resources with information on 3H8M
  • Community annotation for 3H8M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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