3H8Z Protein Binding date Apr 29, 2009
title The Crystal Structure Of The Tudor Domains From Fxr2
authors M.F.Amaya, A.Dong, M.A.Adams-Cioaba, Y.Guo, F.Mackenzie, I.Kozier A.M.Edwards, C.H.Arrowsmith, A.Bochkarev, J.Min, Structural Gen Consortium (Sgc)
compound source
Molecule: Fragile X Mental Retardation Syndrome-Related Pro
Chain: A
Fragment: Unp Residues 13-136
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fxr2, Fmr1l2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.210 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.563 54.676 70.171 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.92 Å
ligand MSE enzyme
note 3H8Z is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural studies of the tandem Tudor domains of fragile X mental retardation related proteins FXR1 and FXR2., Adams-Cioaba MA, Guo Y, Bian C, Amaya MF, Lam R, Wasney GA, Vedadi M, Xu C, Min J, PLoS One. 2010 Nov 2;5(11):e13559. PMID:21072162
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (3h8z.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 3H8Z
  • CSU: Contacts of Structural Units for 3H8Z
  • Likely Quarternary Molecular Structure file(s) for 3H8Z
  • Structure Factors (168 Kb)
  • Retrieve 3H8Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H8Z from S2C, [Save to disk]
  • Re-refined 3h8z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3H8Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3H8Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H8Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h8z_A] [3h8z]
  • SWISS-PROT database: [P51116]
  • Domain organization of [FXR2_HUMAN] by SWISSPFAM
    • Other resources with information on 3H8Z
  • Community annotation for 3H8Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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