3HA0 Immune System date Apr 30, 2009
title Crystal Structure Of The Ige-Fc3-4 Domains
authors B.A.Wurzburg
compound source
Molecule: Ig Epsilon Chain C Region
Chain: A, B, C, D, E, F
Fragment: Unp Residues 209-428
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ighe
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_strain: Hi5
Expression_system_vector_type: Plasmid
Expression_system_vector: Recombinant Baculovirus
Expression_system_plasmid: Pacgp67a
symmetry Space Group: P 1 21 1
R_factor 0.241 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.900 104.900 150.000 90.00 96.20 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand BMA, MAN, NAG enzyme
Primary referenceConformational Flexibility in Immunoglobulin E-Fc(3-4) Revealed in Multiple Crystal Forms., Wurzburg BA, Jardetzky TS, J Mol Biol. 2009 Aug 13. PMID:19682998
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (3ha0.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (3ha0.pdb2.gz) 73 Kb
  • Biological Unit Coordinates (3ha0.pdb3.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 3HA0
  • CSU: Contacts of Structural Units for 3HA0
  • Structure Factors (557 Kb)
  • Retrieve 3HA0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HA0 from S2C, [Save to disk]
  • Re-refined 3ha0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HA0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HA0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HA0, from MSDmotif at EBI
  • Fold representative 3ha0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ha0_F] [3ha0_B] [3ha0_E] [3ha0_A] [3ha0_C] [3ha0] [3ha0_D]
  • SWISS-PROT database: [P01854]
  • Domain organization of [IGHE_HUMAN] by SWISSPFAM
  • Domain found in 3HA0: [IGc1 ] by SMART
  • Alignments of the sequence of 3HA0 with the sequences similar proteins can be viewed for 3HA0's classification [IGHE_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [IGHE_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3HA0
  • Community annotation for 3HA0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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