3HAH Endocytosis date May 01, 2009
title Crystal Structure Of Human Pacsin1 F-Bar Domain (C2 Lattice)
authors Q.Wang, M.V.A.S.Navarro, G.Peng, K.R.Rajashankar, H.Sondermann
compound source
Molecule: Human Pacsin1 F-Bar
Chain: A, B
Synonym: Protein Kinase C And Casein Kinase Substrate In Ne Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa1379, Pacsin1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: C 1 2 1
R_factor 0.215 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.009 85.457 88.392 90.00 117.56 90.00
method X-Ray Diffractionresolution 2.77 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMolecular mechanism of membrane constriction and tubulation mediated by the F-BAR protein Pacsin/Syndapin., Wang Q, Navarro MV, Peng G, Molinelli E, Lin Goh S, Judson BL, Rajashankar KR, Sondermann H, Proc Natl Acad Sci U S A. 2009 Jun 24. PMID:19549836
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (3hah.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 3HAH
  • CSU: Contacts of Structural Units for 3HAH
  • Likely Quarternary Molecular Structure file(s) for 3HAH
  • Structure Factors (234 Kb)
  • Retrieve 3HAH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HAH from S2C, [Save to disk]
  • Re-refined 3hah structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HAH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HAH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HAH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hah_A] [3hah] [3hah_B]
  • SWISS-PROT database: [Q9BY11]
  • Domain organization of [PACN1_HUMAN] by SWISSPFAM
  • Domain found in 3HAH: [FCH ] by SMART
  • Other resources with information on 3HAH
  • Community annotation for 3HAH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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