3HB3 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, CU1, HEA, LDA, LMT, MN, PEO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytochrome-c oxidase activit...


    • B


    C


    Primary referenceHigh resolution crystal structure of Paracoccus denitrificans cytochrome c oxidase: New insights into the active site and the proton transfer pathways., Koepke J, Olkhova E, Angerer H, Muller H, Peng G, Michel H, Biochim Biophys Acta. 2009 Jun;1787(6):635-45. Epub 2009 Apr 15. PMID:19374884
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (3hb3.pdb1.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 3HB3
  • CSU: Contacts of Structural Units for 3HB3
  • Likely Quarternary Molecular Structure file(s) for 3HB3
  • Structure Factors (1732 Kb)
  • Retrieve 3HB3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HB3 from S2C, [Save to disk]
  • Re-refined 3hb3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3HB3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hb3] [3hb3_A] [3hb3_B] [3hb3_C] [3hb3_D]
  • SWISS-PROT database: [P98002] [P08306]
  • Belongs to the proton-translocating cytochrome oxidase (cox) superfamily according to TCDB.
  • Domain found in 3HB3: [IGv ] by SMART

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