3HBX	Lyase	date	May 05, 2009
title	Crystal Structure Of Gad1 From Arabidopsis Thaliana
authors	H.Gut, P.Dominici, S.Pilati, M.G.Gruetter, G.Capitani
compound		source
Molecule: Glutamate Decarboxylase 1 Chain: A, B, C, D, E, F Synonym: Gad 1 Ec: 4.1.1.15 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Mouse-Ear Cress,Thale-Cress Organism_taxid: 3702 Gene: At5g17330, Gad, Gad1, Gdh1, Mkp11.30, Mkp11_18 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 De3 Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet12b
symmetry	Space Group: P 32	R_factor 0.208 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 118.098 118.098 200.576 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.67 Å
ligand	LLP	enzyme	Lyase E.C.4.1.1.15 BRENDA
Gene	MKP11
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	A Common Structural Basis for pH- and Calmodulin-mediated Regulation in Plant Glutamate Decarboxylase., Gut H, Dominici P, Pilati S, Astegno A, Petoukhov MV, Svergun DI, Grutter MG, Capitani G, J Mol Biol. 2009 Jul 4. PMID:19580813

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (432 Kb) [Save to disk] Biological Unit Coordinates (3hbx.pdb1.gz) 425 Kb LPC: Ligand-Protein Contacts for 3HBX CSU: Contacts of Structural Units for 3HBX Likely Quarternary Molecular Structure file(s) for 3HBX Structure Factors (662 Kb) Retrieve 3HBX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HBX from S2C, [Save to disk] Re-refined 3hbx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HBX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HBX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HBX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hbx_E] [3hbx_C] [3hbx_F] [3hbx_A] [3hbx] [3hbx_B] [3hbx_D] SWISS-PROT database: [Q42521] Domain organization of [DCE1_ARATH] by SWISSPFAM

Other resources with information on 3HBX

Community annotation for 3HBX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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