3HCS	Signaling Protein	date	May 06, 2009
title	Crystal Structure Of The N-Terminal Domain Of Traf6
authors	Q.Yin, S.C.Lin, B.Lamothe, M.Lu, Y.C.Lo, G.Hura, L.Zheng, R.L.Ric A.D.Campos, D.G.Myszka, M.J.Lenardo, B.G.Darnay, H.Wu
compound		source
Molecule: Tnf Receptor-Associated Factor 6 Chain: A, B Fragment: Ring And Zinc Fingers 1-3: Unp Residues 50-211 Synonym: Interleukin-1 Signal Transducer, Ring Finger Prote Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rnf85, Traf6 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Codon-Plus Ripl Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b
symmetry	Space Group: C 1 2 1	R_factor 0.229 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 123.663 80.757 50.723 90.00 91.36 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	E2 interaction and dimerization in the crystal structure of TRAF6., Yin Q, Lin SC, Lamothe B, Lu M, Lo YC, Hura G, Zheng L, Rich RL, Campos AD, Myszka DG, Lenardo MJ, Darnay BG, Wu H, Nat Struct Mol Biol. 2009 Jun;16(6):658-66. Epub 2009 May 24. PMID:19465916

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk] Biological Unit Coordinates (3hcs.pdb1.gz) 55 Kb LPC: Ligand-Protein Contacts for 3HCS CSU: Contacts of Structural Units for 3HCS Likely Quarternary Molecular Structure file(s) for 3HCS Structure Factors (584 Kb) Retrieve 3HCS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HCS from S2C, [Save to disk] Re-refined 3hcs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HCS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HCS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HCS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hcs_A] [3hcs] [3hcs_B] SWISS-PROT database: [Q9Y4K3] Domain organization of [TRAF6_HUMAN] by SWISSPFAM Domain found in 3HCS: [RING ] by SMART

Other resources with information on 3HCS

Community annotation for 3HCS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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