3HCV Immune System date May 06, 2009
title Crystal Structure Of Hla-B2709 Complexed With The Double Citrullinated Vasoactive Intestinal Peptide Type 1 Receptor Peptide (Residues 400-408)
authors A.Beltrami, A.Gabdulkhakov, M.Rossmann, A.Ziegler, B.Uchanska-Zi W.Saenger
compound source
Molecule: Hla Class I Histocompatibility Antigen, B-27 Alph
Chain: A
Fragment: Extracelluar Domain, Residues 25-300
Synonym: Mhc Class I Antigen B27
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-B, Hlab
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Beta-2-Microglobulin
Chain: B
Fragment: Residues 21-119
Synonym: Beta-2-Microglobulin Form Pi 5.3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Double Citrullinated Vasoactive Intestinal Polype Receptor;
Chain: C
Engineered: Yes

Synthetic: Yes
Other_details: Synthetic Construct
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.176 82.428 67.017 90.00 110.15 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand CIR enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
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  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (3hcv.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 3HCV
  • CSU: Contacts of Structural Units for 3HCV
  • Likely Quarternary Molecular Structure file(s) for 3HCV
  • Structure Factors (876 Kb)
  • Retrieve 3HCV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HCV from S2C, [Save to disk]
  • Re-refined 3hcv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HCV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HCV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HCV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hcv_C] [3hcv_B] [3hcv_A] [3hcv]
  • SWISS-PROT database: [P03989] [P61769]
  • Domain organization of [1B27_HUMAN] [B2MG_HUMAN] by SWISSPFAM
  • Domain found in 3HCV: [IGc1 ] by SMART
  • Other resources with information on 3HCV
  • Community annotation for 3HCV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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