3HD6 Membrane Protein, Transport Protein date May 06, 2009
title Crystal Structure Of The Human Rhesus Glycoprotein Rhcg
authors F.Gruswitz, S.Chaudhary, J.D.Ho, B.Pezeshki, C.M.Ho, R.M.Stroud, For Structures Of Membrane Proteins (Csmp)
compound source
Molecule: Ammonium Transporter Rh Type C
Chain: A
Synonym: Rhesus Blood Group Family Type C Glycoprotein, Rh Type C Glycoprotein, Rh Type C Glycoprotein, Tumor-Related Drc2, Rh Glycoprotein Kidney;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C15orf6, Cdrc2, Pdrc2, Rhcg, Rhgk
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_strain: Hek293s
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pacmv-Teto-Rho
symmetry Space Group: P 63
R_factor 0.168 R_Free 0.195
length a length b length c angle alpha angle beta angle gamma
99.830 99.830 101.076 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand BOG enzyme

Primary referenceFunction of human Rh based on structure of RhCG at 2.1 A., Gruswitz F, Chaudhary S, Ho JD, Schlessinger A, Pezeshki B, Ho CM, Sali A, Westhoff CM, Stroud RM, Proc Natl Acad Sci U S A. 2010 May 25;107(21):9638-43. Epub 2010 May 10. PMID:20457942
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (3hd6.pdb1.gz) 191 Kb
  • LPC: Ligand-Protein Contacts for 3HD6
  • CSU: Contacts of Structural Units for 3HD6
  • Structure Factors (486 Kb)
  • Retrieve 3HD6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HD6 from S2C, [Save to disk]
  • Re-refined 3hd6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HD6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HD6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HD6, from MSDmotif at EBI
  • Fold representative 3hd6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hd6] [3hd6_A]
  • SWISS-PROT database: [Q9UBD6]
  • Belongs to the ammonium transporter channel (amt) family according to TCDB.
  • Domain organization of [RHCG_HUMAN] by SWISSPFAM
  • Other resources with information on 3HD6
  • Community annotation for 3HD6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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