3HDM	Transferase	date	May 07, 2009
title	Crystal Structure Of Serum And Glucocorticoid-Regulated Kina Complex With Compound 1
authors	B.Zhao, M.Hammond
compound		source
Molecule: Serinethreonine-Protein Kinase Sgk1 Chain: A Synonym: Serumglucocorticoid-Regulated Kinase 1 Ec: 2.7.11.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sgk, Sgk1 Expression_system: Unidentified Baculovirus Expression_system_taxid: 10469 Expression_system_vector_type: Gatway Gst Tagged Expression
symmetry	Space Group: P 65 2 2	R_factor 0.217 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.978 96.978 150.769 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	MMG BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Design and synthesis of orally bioavailable serum and glucocorticoid-regulated kinase 1 (SGK1) inhibitors., Hammond M, Washburn DG, Hoang TH, Manns S, Frazee JS, Nakamura H, Patterson JR, Trizna W, Wu C, Azzarano LM, Nagilla R, Nord M, Trejo R, Head MS, Zhao B, Smallwood AM, Hightower K, Laping NJ, Schnackenberg CG, Thompson SK, Bioorg Med Chem Lett. 2009 May 18. PMID:19497745

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (3hdm.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 3HDM CSU: Contacts of Structural Units for 3HDM Likely Quarternary Molecular Structure file(s) for 3HDM Structure Factors (187 Kb) Retrieve 3HDM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HDM from S2C, [Save to disk] Re-refined 3hdm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HDM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HDM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HDM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hdm_A] [3hdm] SWISS-PROT database: [O00141] Domain organization of [SGK1_HUMAN] by SWISSPFAM Domains found in 3HDM: [S_TK_X] [S_TKc ] by SMART

Other resources with information on 3HDM

Community annotation for 3HDM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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