3HDM Transferase date May 07, 2009
title Crystal Structure Of Serum And Glucocorticoid-Regulated Kina Complex With Compound 1
authors B.Zhao, M.Hammond
compound source
Molecule: Serinethreonine-Protein Kinase Sgk1
Chain: A
Synonym: Serumglucocorticoid-Regulated Kinase 1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sgk, Sgk1
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
Expression_system_vector_type: Gatway Gst Tagged Expression
symmetry Space Group: P 65 2 2
R_factor 0.217 R_Free 0.262
length a length b length c angle alpha angle beta angle gamma
96.978 96.978 150.769 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand MMG BindingDB enzyme Transferase E.C. BRENDA

Primary referenceDesign and synthesis of orally bioavailable serum and glucocorticoid-regulated kinase 1 (SGK1) inhibitors., Hammond M, Washburn DG, Hoang TH, Manns S, Frazee JS, Nakamura H, Patterson JR, Trizna W, Wu C, Azzarano LM, Nagilla R, Nord M, Trejo R, Head MS, Zhao B, Smallwood AM, Hightower K, Laping NJ, Schnackenberg CG, Thompson SK, Bioorg Med Chem Lett. 2009 May 18. PMID:19497745
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3hdm.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3HDM
  • CSU: Contacts of Structural Units for 3HDM
  • Likely Quarternary Molecular Structure file(s) for 3HDM
  • Structure Factors (187 Kb)
  • Retrieve 3HDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HDM from S2C, [Save to disk]
  • Re-refined 3hdm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HDM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HDM, from MSDmotif at EBI
  • Fold representative 3hdm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hdm_A] [3hdm]
  • SWISS-PROT database: [O00141]
  • Domain organization of [SGK1_HUMAN] by SWISSPFAM
  • Domains found in 3HDM: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 3HDM
  • Community annotation for 3HDM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science