3HDN Transferase date May 07, 2009
title Crystal Structure Of Serum And Glucocorticoid-Regulated Kina Complex With Compound 2
authors B.Zhao, M.Hammond
compound source
Molecule: Serinethreonine-Protein Kinase Sgk1
Chain: A
Synonym: Serumglucocorticoid-Regulated Kinase 1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sgk, Sgk1
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
Expression_system_vector_type: Gatway Gst Tagged Expression
symmetry Space Group: P 65 2 2
R_factor 0.250 R_Free 0.278
length a length b length c angle alpha angle beta angle gamma
96.812 96.812 150.779 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.10 Å
ligand GMG BindingDB enzyme Transferase E.C. BRENDA

Primary referenceDesign and synthesis of orally bioavailable serum and glucocorticoid-regulated kinase 1 (SGK1) inhibitors., Hammond M, Washburn DG, Hoang TH, Manns S, Frazee JS, Nakamura H, Patterson JR, Trizna W, Wu C, Azzarano LM, Nagilla R, Nord M, Trejo R, Head MS, Zhao B, Smallwood AM, Hightower K, Laping NJ, Schnackenberg CG, Thompson SK, Bioorg Med Chem Lett. 2009 May 18. PMID:19497745
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3hdn.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3HDN
  • CSU: Contacts of Structural Units for 3HDN
  • Likely Quarternary Molecular Structure file(s) for 3HDN
  • Structure Factors (120 Kb)
  • Retrieve 3HDN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HDN from S2C, [Save to disk]
  • Re-refined 3hdn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HDN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HDN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HDN, from MSDmotif at EBI
  • Fold representative 3hdn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hdn] [3hdn_A]
  • SWISS-PROT database: [O00141]
  • Domain organization of [SGK1_HUMAN] by SWISSPFAM
  • Domains found in 3HDN: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 3HDN
  • Community annotation for 3HDN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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