3HEB Transcription Regulator date May 08, 2009
title Crystal Structure Of Response Regulator Receiver Domain From Rhodospirillum Rubrum
authors B.Syed Ibrahim, S.K.Burley, S.Swaminathan, New York Sgx Researc For Structural Genomics (Nysgxrc)
compound source
Molecule: Response Regulator Receiver Domain Protein (Chey)
Chain: A, B
Engineered: Yes
 Organism_scientific: Rhodospirillum Rubrum
Organism_taxid: 269796
Strain: Atcc 11170
Gene: Rru_a0665
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Top10 Invitrogen
symmetry Space Group: P 1 21 1
R_factor 0.203 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.121 75.071 48.571 90.00 96.41 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MSE, PO4 enzyme
Gene RRU
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3heb.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3HEB
  • CSU: Contacts of Structural Units for 3HEB
  • Likely Quarternary Molecular Structure file(s) for 3HEB
  • Structure Factors (80 Kb)
  • Retrieve 3HEB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HEB from S2C, [Save to disk]
  • Re-refined 3heb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3HEB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3HEB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HEB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3heb_A] [3heb] [3heb_B]
  • SWISS-PROT database: [Q2RWM6]
  • Domain organization of [Q2RWM6_RHORT] by SWISSPFAM
  • Domain found in 3HEB: [REC ] by SMART
    • Other resources with information on 3HEB
  • Community annotation for 3HEB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science