3HEI Transferase Signaling Protein date May 08, 2009
title Ligand Recognition By A-Class Eph Receptors: Crystal Structu Epha2 Ligand-Binding Domain And The Epha2ephrin-A1 Complex
authors J.P.Himanen, Y.Goldgur, H.Miao, E.Myshkin, H.Guo, M.Buck, M.Nguyen K.R.Rajashankar, B.Wang, D.B.Nikolov
compound source
Molecule: Ephrin Type-A Receptor 2
Chain: A, C, E, G, I, K, M, O
Fragment: Unp Residues 28-201
Synonym: Tyrosine-Protein Kinase Receptor Eck, Epithelial C Kinase;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epha2, Eck
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_organ: Kidney
Expression_system_cell: Human Embryonic Kidney (Hek) Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbabe

Molecule: Ephrin-A1
Chain: B, D, F, H, J, L, N, P
Fragment: Unp Residues 18-147
Synonym: Eph-Related Receptor Tyrosine Kinase Ligand 1, Ler Immediate Early Response Protein B61, Tumor Necrosis Factor Induced Protein 4;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Efna1, Eplg1, Lerk1, Tnfaip4
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_organ: Kidney
Expression_system_cell: Human Embryonic Kidney (Hek) Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbabe
symmetry Space Group: P 1
R_factor 0.172 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.483 102.108 135.255 84.25 79.77 73.94
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H, F, J, N, D, P, L, B


Primary referenceLigand recognition by A-class Eph receptors: crystal structures of the EphA2 ligand-binding domain and the EphA2/ephrin-A1 complex., Himanen JP, Goldgur Y, Miao H, Myshkin E, Guo H, Buck M, Nguyen M, Rajashankar KR, Wang B, Nikolov DB, EMBO Rep. 2009 Jun 12. PMID:19525919
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (468 Kb) [Save to disk]
  • Biological Unit Coordinates (3hei.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (3hei.pdb2.gz) 62 Kb
  • Biological Unit Coordinates (3hei.pdb3.gz) 61 Kb
  • Biological Unit Coordinates (3hei.pdb4.gz) 63 Kb
  • Biological Unit Coordinates (3hei.pdb5.gz) 60 Kb
  • Biological Unit Coordinates (3hei.pdb6.gz) 61 Kb
  • Biological Unit Coordinates (3hei.pdb7.gz) 61 Kb
  • Biological Unit Coordinates (3hei.pdb8.gz) 60 Kb
  • CSU: Contacts of Structural Units for 3HEI
  • Likely Quarternary Molecular Structure file(s) for 3HEI
  • Structure Factors (4315 Kb)
  • Retrieve 3HEI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HEI from S2C, [Save to disk]
  • Re-refined 3hei structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HEI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HEI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HEI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hei_O] [3hei_M] [3hei_A] [3hei_G] [3hei_J] [3hei] [3hei_P] [3hei_K] [3hei_L] [3hei_E] [3hei_N] [3hei_B] [3hei_F] [3hei_I] [3hei_H] [3hei_D] [3hei_C]
  • SWISS-PROT database: [P20827] [P29317]
  • Domain organization of [EFNA1_HUMAN] [EPHA2_HUMAN] by SWISSPFAM
  • Domain found in 3HEI: [EPH_lbd ] by SMART
  • Other resources with information on 3HEI
  • Community annotation for 3HEI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science