3HG2 Hydrolase date May 13, 2009
title Human Alpha-Galactosidase Catalytic Mechanism 1. Empty Activ
authors A.I.Guce, N.E.Clark, S.C.Garman
compound source
Molecule: Alpha-Galactosidase A
Chain: A, B
Synonym: Alpha-D-Galactoside Galactohydrolase, Alpha-D-Gala A, Melibiase;
Ec: 3.2.1.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gla
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 32 2 1
R_factor 0.176 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.813 90.813 217.166 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand ACY, BMA, FUC, GAL, NAG, SO4 enzyme Hydrolase E.C.3.2.1.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCatalytic mechanism of human alpha-galactosidase., Guce AI, Clark NE, Salgado EN, Ivanen DR, Kulminskaya AA, Brumer H 3rd, Garman SC, J Biol Chem. 2010 Feb 5;285(6):3625-32. Epub 2009 Nov 25. PMID:19940122
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (3hg2.pdb1.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 3HG2
  • CSU: Contacts of Structural Units for 3HG2
  • Structure Factors (347 Kb)
  • Retrieve 3HG2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HG2 from S2C, [Save to disk]
  • Re-refined 3hg2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HG2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HG2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HG2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r3hg2, region G:7001-7180 [Jmol] [rasmolscript] [script source]
  • Fold representative 3hg2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hg2_A] [3hg2] [3hg2_B]
  • SWISS-PROT database: [P06280]
  • Domain organization of [AGAL_HUMAN] by SWISSPFAM
  • Other resources with information on 3HG2
  • Community annotation for 3HG2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science