3HHB Oxygen Transport date Mar 07, 1984
title The Crystal Structure Of Human Deoxyhaemoglobin At 1.74 Angs Resolution
authors G.Fermi, M.F.Perutz
compound source
Molecule: Hemoglobin (Deoxy) (Alpha Chain)
Chain: A, C
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Hemoglobin (Deoxy) (Beta Chain)
Chain: B, D

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.200 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.150 83.590 53.800 90.00 99.34 90.00
method X-Ray Diffractionresolution 1.74 Å
ligand HEM, PO4 enzyme
related structures by homologous chain: 1SDK, 2HHB
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • peroxidase activity


  • D, B
  • peroxidase activity


  • Primary referenceThe crystal structure of human deoxyhaemoglobin at 1.74 A resolution., Fermi G, Perutz MF, Shaanan B, Fourme R, J Mol Biol 1984 May 15;175(2):159-74. PMID:6726807
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (3hhb.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 3HHB
  • CSU: Contacts of Structural Units for 3HHB
  • Likely Quarternary Molecular Structure file(s) for 3HHB
  • Retrieve 3HHB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HHB from S2C, [Save to disk]
  • View 3HHB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HHB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HHB, from MSDmotif at EBI
  • Genome occurence of 3HHB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3hhba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d3hhbb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 3hhb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hhb_D] [3hhb_C] [3hhb_A] [3hhb] [3hhb_B]
  • SWISS-PROT database: [P69905] [P68871]
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Domain organization of [HBA_HUMAN] [HBB_HUMAN] by SWISSPFAM
  • Other resources with information on 3HHB
  • Community annotation for 3HHB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 3HHB from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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