3HI1	Structural Protein Immune System	date	May 18, 2009
title	Structure Of Hiv-1 Gp120 (Core With V3) In Complex With Cd4- Site Antibody F105
authors	Y.D.Kwon, L.Chen, T.Zhou, X.Wu, S.O'Dell, L.Cavacini, A.J.Hessell, M.Pancera, M.Tang, L.Xu, Z.Yang, M.Y.Zhang, J.Arthos, D.R.Burton D.Dimitrov, G.J.Nabel, M.Posner, J.Sodroski, R.Wyatt, J.R.Mascol P.D.Kwong
compound		source
Molecule: Glycoprotein 120 Chain: G, J Synonym: Gp120, Su Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Organism_common: Hiv-1 Organism_taxid: 362651 Strain: Yu-2 Gene: Env Expression_system: Adenovirus Expression_system_taxid: 10535 Expression_system_strain: Ad5 Expression_system_cell: Kidney Embryonic Cell Line 293 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pshuttle-Cmv
Molecule: F105 Light Chain Chain: L, A		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Produced By Fusion Of Antibody-Producing Eps Viurs-Transformed Cells With The Hmma2.11tgo Cell Line;
Molecule: F105 Heavy Chain Chain: H, B		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Produced By Fusion Of Antibody-Producing Eps Viurs-Transformed Cells With The Hmma2.11tgo Cell Line
symmetry	Space Group: H 3 2	R_factor 0.202 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 412.403 412.403 83.206 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	NAG	enzyme
Gene Ontology	Chain Function Process Component A, L J, G
Primary reference	Structural basis of immune evasion at the site of CD4 attachment on HIV-1 gp120., Chen L, Do Kwon Y, Zhou T, Wu X, O'Dell S, Cavacini L, Hessell AJ, Pancera M, Tang M, Xu L, Yang ZY, Zhang MY, Arthos J, Burton DR, Dimitrov DS, Nabel GJ, Posner MR, Sodroski J, Wyatt R, Mascola JR, Kwong PD, Science. 2009 Nov 20;326(5956):1123-7. PMID:19965434

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (498 Kb) [Save to disk] Biological Unit Coordinates (3hi1.pdb1.gz) 486 Kb LPC: Ligand-Protein Contacts for 3HI1 CSU: Contacts of Structural Units for 3HI1 Structure Factors (610 Kb) Retrieve 3HI1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HI1 from S2C, [Save to disk] Re-refined 3hi1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HI1 in 3D

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HI1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hi1_H] [3hi1_A] [3hi1_B] [3hi1_L] [3hi1_G] [3hi1_J] [3hi1] SWISS-PROT database: [P35961] Domain organization of [ENV_HV1Y2] by SWISSPFAM Domains found in 3HI1: [IG_like] [IGv ] by SMART

Other resources with information on 3HI1

Community annotation for 3HI1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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