3HI9 Transcription date May 19, 2009
title The X-Ray Crystal Structure Of The First Rna Recognition Motif (Rrm1) Of The Au-Rich Element (Are) Binding Protein Hur At 2.0 Angstrom Resolution
authors R.M.Benoit, J.Kallen
compound source
Molecule: Elav-Like Protein 1
Chain: A, B, C, D
Fragment: Rrm1 Domain: Unp Residues 18-99
Synonym: Hu-Antigen R, Hur
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Elavl1, Hur
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 31 2 1
R_factor 0.197 R_Free 0.232
length a length b length c angle alpha angle beta angle gamma
74.804 74.804 147.361 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceThe X-ray Crystal Structure of the First RNA Recognition Motif and Site-Directed Mutagenesis Suggest a Possible HuR Redox Sensing Mechanism., Benoit RM, Meisner NC, Kallen J, Graff P, Hemmig R, Cebe R, Ostermeier C, Widmer H, Auer M, J Mol Biol. 2010 Apr 16;397(5):1231-1244. Epub 2010 Feb 26. PMID:20219472
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3hi9.pdb1.gz) 15 Kb
  • Biological Unit Coordinates (3hi9.pdb2.gz) 14 Kb
  • Biological Unit Coordinates (3hi9.pdb3.gz) 15 Kb
  • Biological Unit Coordinates (3hi9.pdb4.gz) 15 Kb
  • CSU: Contacts of Structural Units for 3HI9
  • Structure Factors (476 Kb)
  • Retrieve 3HI9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HI9 from S2C, [Save to disk]
  • Re-refined 3hi9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HI9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HI9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HI9, from MSDmotif at EBI
  • Fold representative 3hi9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hi9_A] [3hi9_B] [3hi9_D] [3hi9_C] [3hi9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3HI9: [RRM ] by SMART
  • Alignments of the sequence of 3HI9 with the sequences similar proteins can be viewed for 3HI9's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3HI9
  • Community annotation for 3HI9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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