3HI9 Transcription date May 19, 2009
title The X-Ray Crystal Structure Of The First Rna Recognition Motif (Rrm1) Of The Au-Rich Element (Are) Binding Protein Hur At 2.0 Angstrom Resolution
authors R.M.Benoit, J.Kallen
compound source
Molecule: Elav-Like Protein 1
Chain: A, B, C, D
Fragment: Rrm1 Domain: Unp Residues 18-99
Synonym: Hu-Antigen R, Hur
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Elavl1, Hur
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 31 2 1
R_factor 0.197 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.804 74.804 147.361 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe X-ray Crystal Structure of the First RNA Recognition Motif and Site-Directed Mutagenesis Suggest a Possible HuR Redox Sensing Mechanism., Benoit RM, Meisner NC, Kallen J, Graff P, Hemmig R, Cebe R, Ostermeier C, Widmer H, Auer M, J Mol Biol. 2010 Apr 16;397(5):1231-1244. Epub 2010 Feb 26. PMID:20219472
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3hi9.pdb1.gz) 15 Kb
  • Biological Unit Coordinates (3hi9.pdb2.gz) 14 Kb
  • Biological Unit Coordinates (3hi9.pdb3.gz) 15 Kb
  • Biological Unit Coordinates (3hi9.pdb4.gz) 15 Kb
  • CSU: Contacts of Structural Units for 3HI9
  • Structure Factors (476 Kb)
  • Retrieve 3HI9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HI9 from S2C, [Save to disk]
  • Re-refined 3hi9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HI9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HI9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HI9, from MSDmotif at EBI
  • Fold representative 3hi9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hi9_A] [3hi9_B] [3hi9_D] [3hi9_C] [3hi9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3HI9: [RRM ] by SMART
  • Other resources with information on 3HI9
  • Community annotation for 3HI9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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