3HMH Transcription date May 29, 2009
title Crystal Structure Of The Second Bromodomain Of Human Tbp-Ass Factor Rna Polymerase 1-Like (Taf1l)
authors P.Filippakopoulos, S.Picaud, T.Keates, Y.Zhang, A.C.W.Pike, F.Von C.H.Arrowsmith, A.Edwards, J.Weigelt, C.Bountra, S.Knapp, Struct Genomics Consortium (Sgc)
compound source
Molecule: Transcription Initiation Factor Tfiid 210 Kda Sub
Chain: A
Fragment: Bromodomain, Unp Residues 1523-1651
Synonym: Taf1l, Tbp-Associated Factor 210 Kda, Taf(II)210, Associated Factor 1-Like;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf1l
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 32 2 1
R_factor 0.181 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.139 55.139 84.441 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
Primary referenceHistone recognition and large-scale structural analysis of the human bromodomain family., Filippakopoulos P, Picaud S, Mangos M, Keates T, Lambert JP, Barsyte-Lovejoy D, Felletar I, Volkmer R, Muller S, Pawson T, Gingras AC, Arrowsmith CH, Knapp S, Cell. 2012 Mar 30;149(1):214-31. PMID:22464331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (3hmh.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (3hmh.pdb2.gz) 48 Kb
  • CSU: Contacts of Structural Units for 3HMH
  • Likely Quarternary Molecular Structure file(s) for 3HMH
  • Structure Factors (139 Kb)
  • Retrieve 3HMH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HMH from S2C, [Save to disk]
  • Re-refined 3hmh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HMH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HMH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HMH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hmh_A] [3hmh]
  • SWISS-PROT database: [Q8IZX4]
  • Domain organization of [TAF1L_HUMAN] by SWISSPFAM
  • Domain found in 3HMH: [BROMO ] by SMART
  • Other resources with information on 3HMH
  • Community annotation for 3HMH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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