3HMI Transferase date May 29, 2009
title The Crystal Structure Of Human Abl2 In Complex With 5-Amino- (Aminosulfonyl)Phenyl]Amino}-N-(2,6-Difluorophenyl)-1h-1,2, Triazole-1-Carbothioamide
authors E.Ugochukwu, E.Salah, A.Barr, P.Mahajan, B.Shrestha, P.Savitsky, A.Chaikuad, C.Allerston, F.Von Delft, C.Bountra, C.H.Arrowsmith J.Weigelt, A.Edwards, S.Knapp, Structural Genomics Consortium
compound source
Molecule: Tyrosine-Protein Kinase Abl2
Chain: A
Fragment: Protein Kinase
Synonym: Abelson Murine Leukemia Viral Oncogene Homolog 2, Related Gene Protein, Tyrosine Kinase Arg;
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abl2
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: High 5 Insect Cells
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
symmetry Space Group: C 1 2 1
R_factor 0.188 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
165.920 39.800 43.130 90.00 95.69 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand DKI enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3hmi.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 3HMI
  • CSU: Contacts of Structural Units for 3HMI
  • Likely Quarternary Molecular Structure file(s) for 3HMI
  • Structure Factors (443 Kb)
  • Retrieve 3HMI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HMI from S2C, [Save to disk]
  • Re-refined 3hmi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HMI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HMI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HMI, from MSDmotif at EBI
  • Fold representative 3hmi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hmi] [3hmi_A]
  • SWISS-PROT database: [P42684]
  • Domain organization of [ABL2_HUMAN] by SWISSPFAM
  • Domain found in 3HMI: [TyrKc ] by SMART
  • Other resources with information on 3HMI
  • Community annotation for 3HMI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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