3HMM Transferase date May 29, 2009
title Structure Of Alk5 + Gw855857
authors W.Smith, C.Janson
compound source
Molecule: Tgf-Beta Receptor Type-1
Chain: A
Fragment: Kinase Domain, Residues 201-503
Synonym: Transforming Growth Factor-Beta Receptor Type I, Tgf-Beta Receptor Type I, Tgf-Beta Type I Receptor, Tbetar- I, Tgfr-1, Serinethreonine-Protein Kinase Receptor R4, Skr4, Activin Receptor-Like Kinase 5, Alk-5;
Ec: 2.7.11.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.223 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.009 75.343 89.678 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 855 BindingDB enzyme Transferase E.C.2.7.11.30 BRENDA
note 3HMM supersedes 3GXJ
Primary referenceDesign of novel quinazoline derivatives and related analogues as potent and selective ALK5 inhibitors., Gellibert F, Fouchet MH, Nguyen VL, Wang R, Krysa G, de Gouville AC, Huet S, Dodic N, Bioorg Med Chem Lett. 2009 Apr 15;19(8):2277-81. Epub 2009 Feb 26. PMID:19285388
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3hmm.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 3HMM
  • CSU: Contacts of Structural Units for 3HMM
  • Likely Quarternary Molecular Structure file(s) for 3HMM
  • Structure Factors (288 Kb)
  • Retrieve 3HMM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HMM from S2C, [Save to disk]
  • Re-refined 3hmm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HMM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HMM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HMM, from MSDmotif at EBI
  • Fold representative 3hmm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hmm] [3hmm_A]
  • SWISS-PROT database: [P36897]
  • Domain organization of [TGFR1_HUMAN] by SWISSPFAM
  • Other resources with information on 3HMM
  • Community annotation for 3HMM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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