OCA Atlas for 3HMW

3HMW

Immune System

date

May 29, 2009

title

Crystal Structure Of Ustekinumab Fab

authors

J.Luo

compound

source

Molecule: Ustekinumab Fab Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
Other_details: Papain Digested From Mab

Molecule: Ustekinumab Fab Heavy Chain
Chain: H
Engineered: Yes

symmetry

Space Group: P 63 2 2

R_factor

0.228

R_Free

0.287

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
139.310	139.310	114.580	90.00	90.00	120.00

method

X-Ray Diffraction

resolution

3.00 Å

ligand

enzyme

Primary reference

Structural basis for the dual recognition of IL-12 and IL-23 by ustekinumab., Luo J, Wu SJ, Lacy ER, Orlovsky Y, Baker A, Teplyakov A, Obmolova G, Heavner GA, Richter HT, Benson J, J Mol Biol. 2010 Oct 8;402(5):797-812. Epub 2010 Aug 4. PMID:20691190

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]

Biological Unit Coordinates (3hmw.pdb1.gz) 142 Kb

LPC: Ligand-Protein Contacts for 3HMW

CSU: Contacts of Structural Units for 3HMW

Structure Factors (99 Kb)

Retrieve 3HMW in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3HMW from S2C, [Save to disk]

Re-refined 3hmw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HMW in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HMW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 3HMW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hmw_L] [3hmw] [3hmw_H]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domains found in 3HMW: [IG_like] [IGv ] by SMART

Other resources with information on 3HMW

Community annotation for 3HMW at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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