3HMY Hydrolase date May 29, 2009
title Crystal Structure Of Hcrt Complexed With Gt2
authors C.Chen, Z.Fu, J.J.P.Kim, J.T.Barbieri, M.R.Baldwin
compound source
Molecule: Tetanus Toxin
Chain: A
Fragment: Receptor Binding Domain (Unp Residues 866-1315)
Synonym: Tentoxylysin
Ec: 3.4.24.68
Engineered: Yes
 Organism_scientific: Clostridium Tetani
Organism_taxid: 1513
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.960 72.690 119.050 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, SIA, SO4 enzyme Hydrolase E.C.3.4.24.68 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGangliosides as high affinity receptors for tetanus neurotoxin., Chen C, Fu Z, Kim JJ, Barbieri JT, Baldwin MR, J Biol Chem. 2009 Sep 25;284(39):26569-77. Epub 2009 Jul 14. PMID:19602728
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (3hmy.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 3HMY
  • CSU: Contacts of Structural Units for 3HMY
  • Likely Quarternary Molecular Structure file(s) for 3HMY
  • Structure Factors (281 Kb)
  • Retrieve 3HMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HMY from S2C, [Save to disk]
  • Re-refined 3hmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3HMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3HMY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HMY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hmy_A] [3hmy]
  • SWISS-PROT database: [P04958]
  • Belongs to the botulinum and tetanus toxin (btt) family according to TCDB.
  • Domain organization of [TETX_CLOTE] by SWISSPFAM
    • Other resources with information on 3HMY
  • Community annotation for 3HMY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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