3HNG	Transferase	date	May 31, 2009
title	Crystal Structure Of Vegfr1 In Complex With N-(4-Chloropheny ((Pyridin-4-Ylmethyl)Amino)Benzamide
authors	L.Tresaugues, A.Roos, C.H.Arrowsmith, H.Berglund, C.Bountra, R.Co A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, A.Jo I.Johansson, T.Karlberg, T.Kotenyova, M.Moche, T.Nyman, C.Persso T.Kragh-Nielsen, A.Kotzch, J.Sagemark, H.Schueler, P.Schutz, M.I L.Svensson, A.G.Thorsell, S.Van Der Berg, J.Weigelt, M.Welin, M.Wisniewska, P.Nordlund, Structural Genomics Consortium (Sgc
compound		source
Molecule: Vascular Endothelial Growth Factor Receptor 1 Chain: A Fragment: Kinase Domain, Unp Residues 801-1158 Synonym: Vegfr-1, Vascular Permeability Factor Receptor, Ty Protein Kinase Receptor Flt, Flt-1, Tyrosine-Protein Kinase Like Tyrosine Kinase 1; Ec: 2.7.10.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Flt1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Prare Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic-Bsa4
symmetry	Space Group: I 2 2 2	R_factor 0.194 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.040 71.150 196.020 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	8ST, CL BindingDB	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (3hng.pdb1.gz) 47 Kb LPC: Ligand-Protein Contacts for 3HNG CSU: Contacts of Structural Units for 3HNG Likely Quarternary Molecular Structure file(s) for 3HNG Structure Factors (176 Kb) Retrieve 3HNG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HNG from S2C, [Save to disk] Re-refined 3hng structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HNG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HNG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HNG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hng_A] [3hng] SWISS-PROT database: [P17948] Domain organization of [VGFR1_HUMAN] by SWISSPFAM Domain found in 3HNG: [TyrKc ] by SMART

Other resources with information on 3HNG

Community annotation for 3HNG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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