3HO5 Signaling Protein date Jun 01, 2009
title Crystal Structure Of Hedgehog-Interacting Protein (Hhip) And Hedgehog (Shh) Complex
authors S.G.Hymowitz, I.Bosanac
compound source
Molecule: Hedgehog-Interacting Protein
Chain: A, B
Fragment: Unp Residues 193-667
Synonym: Hhip, Hip
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hhip, Hip, Unq5825pro19644
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: Insect Cells
Expression_system_vector_type: Gateway Vector Pentrd-Topo (Invitrogen);
Expression_system_plasmid: Pentrd-Topo With Honeybee Melit Secretion Signal;

Molecule: Sonic Hedgehog Protein
Chain: H
Fragment: Unp Residues 29-197
Synonym: Shh, Hhg-1, Sonic Hedgehog Protein N-Product, Soni Protein C-Product;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Shh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Rosetta 2 (Novagen)
Expression_system_vector_type: Pet101d-Topo (Invitrogen) W Promoter;
Expression_system_plasmid: Pet101d-Topo (Invitrogen)
symmetry Space Group: P 31 2 1
R_factor 0.231 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.618 101.618 302.830 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.01 Å
ligand CA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


H


Primary referenceThe structure of SHH in complex with HHIP reveals a recognition role for the Shh pseudo active site in signaling., Bosanac I, Maun HR, Scales SJ, Wen X, Lingel A, Bazan JF, de Sauvage FJ, Hymowitz SG, Lazarus RA, Nat Struct Mol Biol. 2009 Jul;16(7):691-7. Epub 2009 Jun 28. PMID:19561609
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (3ho5.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (3ho5.pdb2.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 3HO5
  • CSU: Contacts of Structural Units for 3HO5
  • Likely Quarternary Molecular Structure file(s) for 3HO5
  • Structure Factors (292 Kb)
  • Retrieve 3HO5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HO5 from S2C, [Save to disk]
  • Re-refined 3ho5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HO5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HO5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HO5, from MSDmotif at EBI
  • Fold representative 3ho5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ho5] [3ho5_A] [3ho5_H] [3ho5_B]
  • SWISS-PROT database: [Q96QV1] [Q15465]
  • Domain organization of [HHIP_HUMAN] [SHH_HUMAN] by SWISSPFAM
  • Domain found in 3HO5: [EGF ] by SMART
  • Other resources with information on 3HO5
  • Community annotation for 3HO5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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