3HPL Immune System Metal Transport date Jun 04, 2009
title Kcsa E71h-F103a Mutant In The Closed State
authors L.G.Cuello, V.Jogini, D.M.Cortes, E.Perozo
compound source
Molecule: Antibody Fab Heavy Chain
Chain: A
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Cell_line: Hybridoma

Molecule: Antibody Fab Light Chain
Chain: B
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Cell_line: Hybridoma

Molecule: Voltage-Gated Potassium Channel
Chain: C
Fragment: Unp Residues 1-124
Engineered: Yes
Mutation: Yes

Organism_scientific: Streptomyces Lividans
Organism_taxid: 1916
Gene: Kcsa, Skc1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl10 Gold
Expression_system_vector_type: T5 Promoter
Expression_system_plasmid: Pqe70
symmetry Space Group: I 4
R_factor 0.220 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
156.140 156.140 76.292 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand K enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceStructural basis for the coupling between activation and inactivation gates in K(+) channels., Cuello LG, Jogini V, Cortes DM, Pan AC, Gagnon DG, Dalmas O, Cordero-Morales JF, Chakrapani S, Roux B, Perozo E, Nature. 2010 Jul 8;466(7303):272-5. PMID:20613845
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (3hpl.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 3HPL
  • CSU: Contacts of Structural Units for 3HPL
  • Structure Factors (121 Kb)
  • Retrieve 3HPL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HPL from S2C, [Save to disk]
  • Re-refined 3hpl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HPL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HPL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HPL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hpl_C] [3hpl_B] [3hpl] [3hpl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3HPL: [IG_like] [IGv ] by SMART
  • Other resources with information on 3HPL
  • Community annotation for 3HPL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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