3HR0 Transport Protein date Jun 08, 2009
title Crystal Structure Of Homo Sapiens Conserved Oligomeric Golgi
authors B.C.Richardson, D.Ungar, A.Nakamura, P.D.Jeffrey, F.M.Hughson
compound source
Molecule: Cog4
Chain: A, B
Fragment: Residues 525-785
Synonym: Conserved Oligomeric Golgi Complex Subunit 4, Comp Oligomeric Golgi Complex 4;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cog4, Cog4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pgex
Expression_system_plasmid: Pdu01
symmetry Space Group: P 32 2 1
R_factor 0.194 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.114 87.114 214.773 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for a human glycosylation disorder caused by mutation of the COG4 gene., Richardson BC, Smith RD, Ungar D, Nakamura A, Jeffrey PD, Lupashin VV, Hughson FM, Proc Natl Acad Sci U S A. 2009 Jul 27. PMID:19651599
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (3hr0.pdb1.gz) 86 Kb
  • CSU: Contacts of Structural Units for 3HR0
  • Likely Quarternary Molecular Structure file(s) for 3HR0
  • Structure Factors (1091 Kb)
  • Retrieve 3HR0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HR0 from S2C, [Save to disk]
  • Re-refined 3hr0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HR0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HR0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HR0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hr0_B] [3hr0_A] [3hr0]
  • SWISS-PROT database: [Q9H9E3]
  • Domain organization of [COG4_HUMAN] by SWISSPFAM
  • Other resources with information on 3HR0
  • Community annotation for 3HR0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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