3HRN Transport Protein date Jun 09, 2009
title Crystal Structure Of A C-Terminal Coiled Coil Domain Of Transient Receptor Potential (Trp) Channel Subfamily P Member 2 (Trpp2, Polycystic Kidney Disease 2)
authors Y.Yu, M.H.Ulbrich, M.H.Li, Z.Buraei, X.Z.Chen, A.C.M.Ong, L.Tong, E.Y.Isacoff, J.Yang
compound source
Molecule: Transient Receptor Potential (Trp) Channel Subfamily P Member 2 (Trpp2);
Chain: A
Fragment: C-Terminal Of Coiled Coil Domain, Unp Residues 833-895;
Synonym: Polycystin-2, Polycystic Kidney Disease 2 Protein, Autosomal Dominant Polycystic Kidney Disease Type II Protein, Polycystwin, R48321;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkd2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdfduet-1
symmetry Space Group: H 3 2
R_factor 0.199 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.642 43.642 200.351 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
Primary referenceStructural and molecular basis of the assembly of the TRPP2/PKD1 complex., Yu Y, Ulbrich MH, Li MH, Buraei Z, Chen XZ, Ong AC, Tong L, Isacoff EY, Yang J, Proc Natl Acad Sci U S A. 2009 Jul 14;106(28):11558-63. Epub 2009 Jun 25. PMID:19556541
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk]
  • Biological Unit Coordinates (3hrn.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 3HRN
  • Likely Quarternary Molecular Structure file(s) for 3HRN
  • Structure Factors (53 Kb)
  • Retrieve 3HRN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HRN from S2C, [Save to disk]
  • Re-refined 3hrn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HRN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HRN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HRN, from MSDmotif at EBI
  • Fold representative 3hrn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hrn_A] [3hrn]
  • SWISS-PROT database: [Q13563]
  • Belongs to the polycystin cation channel (pcc) family according to TCDB.
  • Domain organization of [PKD2_HUMAN] by SWISSPFAM
  • Other resources with information on 3HRN
  • Community annotation for 3HRN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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