3HU2 Transport Protein date Jun 12, 2009
title Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
authors W.K.Tang
compound source
Molecule: Transitional Endoplasmic Reticulum Atpase
Chain: A, B, C, D, E, F
Fragment: Residues 1-481
Synonym: Ter Atpase, 15s Mg(2+)-Atpase P97 Subunit, Valosin Containing Protein, Vcp;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Human
Gene: P97, Vcp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe60
symmetry Space Group: P 1
R_factor 0.258 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.892 102.645 107.182 97.52 90.63 91.45
method X-Ray Diffractionresolution 2.85 Å
ligand AGS, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceA novel ATP-dependent conformation in p97 N-D1 fragment revealed by crystal structures of disease-related mutants., Tang WK, Li D, Li CC, Esser L, Dai R, Guo L, Xia D, EMBO J. 2010 May 28. PMID:20512113
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (434 Kb) [Save to disk]
  • Biological Unit Coordinates (3hu2.pdb1.gz) 419 Kb
  • LPC: Ligand-Protein Contacts for 3HU2
  • CSU: Contacts of Structural Units for 3HU2
  • Structure Factors (960 Kb)
  • Retrieve 3HU2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HU2 from S2C, [Save to disk]
  • Re-refined 3hu2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HU2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HU2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HU2, from MSDmotif at EBI
  • Fold representative 3hu2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hu2_C] [3hu2_A] [3hu2] [3hu2_B] [3hu2_F] [3hu2_D] [3hu2_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3HU2: [AAA] [CDC48_2] [CDC48_N ] by SMART
  • Other resources with information on 3HU2
  • Community annotation for 3HU2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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