3HUS	Blood Clotting	date	Jun 15, 2009
title	Crystal Structure Of Recombinant Gamma N308k Fibrinogen Frag With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
authors	S.T.Lord, S.R.Bowley, N.Okumura
compound		source
Molecule: Fibrinogen Alpha Chain Chain: A, D Fragment: Fragment D: Unp Residues 145-210 Synonym: Fibrinopeptide A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fga Expression_system: Cricetulus Griseus Expression_system_taxid: 10029 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmlp
Molecule: Fibrinogen Beta Chain Chain: B, E Fragment: Fragment D: Unp Residues 179-491 Synonym: Fibrinopeptide B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fgb Expression_system: Cricetulus Griseus Expression_system_taxid: 10029 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmlp
Molecule: Fibrinogen Gamma Chain Chain: C, F Fragment: Fragment D: Unp Residues 122-432 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fgg, Pro2061 Expression_system: Cricetulus Griseus Expression_system_taxid: 10029 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmlp
Molecule: Peptide Ligand Gly-Pro-Arg-Pro-Amide Chain: G, H, I, J Engineered: Yes		Synthetic: Yes Other_details: Peptide Ligand Gly-Pro-Arg-Pro-Amide
symmetry	Space Group: P 43 21 2	R_factor 0.220 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 95.009 95.009 448.382 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.04 Å
ligand	CA, FUC, NAG	enzyme
Gene Ontology	Chain Function Process Component E, B eukaryotic cell surface bind... chaperone binding platelet degranulation blood coagulation hemostasis platelet activation response to calcium ion extracellular region fibrinogen complex extracellular space plasma membrane cell cortex external side of plasma memb... platelet alpha granule platelet alpha granule lumen... blood microparticle F, C eukaryotic cell surface bind... metal ion binding platelet degranulation blood coagulation hemostasis platelet activation response to calcium ion extracellular region fibrinogen complex extracellular space plasma membrane cell cortex external side of plasma memb... platelet alpha granule platelet alpha granule lumen... blood microparticle
Primary reference	Impaired protofibril formation in fibrinogen N308K is due to altered D:D and A:a interactions., Bowley SR, Okumura N, Lord ST, Biochemistry. 2009 Aug 3. PMID:19650644

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk] Biological Unit Coordinates (3hus.pdb1.gz) 110 Kb Biological Unit Coordinates (3hus.pdb2.gz) 111 Kb LPC: Ligand-Protein Contacts for 3HUS CSU: Contacts of Structural Units for 3HUS Structure Factors (621 Kb) Retrieve 3HUS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HUS from S2C, [Save to disk] Re-refined 3hus structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HUS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3HUS

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3HUS, from MSDmotif at EBI Fold representative 3hus from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hus_A] [3hus_B] [3hus_C] [3hus_D] [3hus_E] [3hus_F] [3hus_G] [3hus_H] [3hus_I] [3hus_J] SWISS-PROT database: [P02671] [P02675] [P02679] Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM Domain found in 3HUS: [FBG ] by SMART Alignments of the sequence of 3HUS with the sequences similar proteins can be viewed for 3HUS's classification [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 3HUS

Community annotation for 3HUS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2010 Bioinformatics Unit Weizmann Institute of Science

---