3HUS Blood Clotting date Jun 15, 2009
title Crystal Structure Of Recombinant Gamma N308k Fibrinogen Frag With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
authors S.T.Lord, S.R.Bowley, N.Okumura
compound source
Molecule: Fibrinogen Alpha Chain
Chain: A, D
Fragment: Fragment D: Unp Residues 145-210
Synonym: Fibrinopeptide A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fga
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmlp

Molecule: Fibrinogen Beta Chain
Chain: B, E
Fragment: Fragment D: Unp Residues 179-491
Synonym: Fibrinopeptide B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgb
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmlp

Molecule: Fibrinogen Gamma Chain
Chain: C, F
Fragment: Fragment D: Unp Residues 122-432
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgg, Pro2061
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmlp

Molecule: Peptide Ligand Gly-Pro-Arg-Pro-Amide
Chain: G, H, I, J
Engineered: Yes

Synthetic: Yes
Other_details: Peptide Ligand Gly-Pro-Arg-Pro-Amide
symmetry Space Group: P 43 21 2
R_factor 0.220 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.009 95.009 448.382 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.04 Å
ligand CA, FUC, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceImpaired protofibril formation in fibrinogen N308K is due to altered D:D and A:a interactions., Bowley SR, Okumura N, Lord ST, Biochemistry. 2009 Aug 3. PMID:19650644
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]
  • Biological Unit Coordinates (3hus.pdb1.gz) 110 Kb
  • Biological Unit Coordinates (3hus.pdb2.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 3HUS
  • CSU: Contacts of Structural Units for 3HUS
  • Structure Factors (621 Kb)
  • Retrieve 3HUS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HUS from S2C, [Save to disk]
  • Re-refined 3hus structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HUS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HUS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HUS, from MSDmotif at EBI
  • Fold representative 3hus from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hus] [3hus_F] [3hus_G] [3hus_J] [3hus_B] [3hus_H] [3hus_D] [3hus_I] [3hus_A] [3hus_E] [3hus_C]
  • SWISS-PROT database: [P02671] [P02675] [P02679]
  • Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM
  • Domain found in 3HUS: [FBG ] by SMART
  • Other resources with information on 3HUS
  • Community annotation for 3HUS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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