3HWB Membrane Protein, Ion Transport date Jun 17, 2009
title Cation Selective Pathway Of Ompf Porin Revealed By Anomalous Diffraction
authors D.Balasundaresan, S.Raychaudhury, L.Blachowicz, B.Roux
compound source
Molecule: Outer Membrane Protein F
Chain: A, B
Synonym: Porin Ompf, Outer Membrane Protein 1a, Outer Membr Protein Ia, Outer Membrane Protein B;
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12
Gene: Ompf, Cmlb, Coa, Cry, Tolf, B0929, Jw0912
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Mh225
Expression_system_plasmid: Ppr272
symmetry Space Group: P 63
R_factor 0.231 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.192 117.192 116.885 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand P6G, RB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCation-selective Pathway of OmpF Porin Revealed by Anomalous X-ray Diffraction., Dhakshnamoorthy B, Raychaudhury S, Blachowicz L, Roux B, J Mol Biol. 2009 Nov 20. PMID:19932117
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (3hwb.pdb1.gz) 157 Kb
  • Biological Unit Coordinates (3hwb.pdb2.gz) 157 Kb
  • Biological Unit Coordinates (3hwb.pdb3.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 3HWB
  • CSU: Contacts of Structural Units for 3HWB
  • Structure Factors (381 Kb)
  • Retrieve 3HWB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HWB from S2C, [Save to disk]
  • Re-refined 3hwb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HWB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HWB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HWB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hwb] [3hwb_B] [3hwb_A]
  • SWISS-PROT database: [P02931]
  • Belongs to the general bacterial porin (gbp) family according to TCDB.
  • Domain organization of [OMPF_ECOLI] by SWISSPFAM
  • Other resources with information on 3HWB
  • Community annotation for 3HWB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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