3HWT	Transferase Dna	date	Jun 18, 2009
title	Ternary Complex Of Dna Polymerase Lambda Bound To A Two Nucl Gapped Dna Substrate With A Scrunched Da
authors	M.Garcia-Diaz, K.Bebenek, A.A.Larrea, L.C.Pedersen, T.A.Kunkel
compound		source
Molecule: Dna Polymerase Lambda Chain: A Fragment: Unp Residues 242-575 Synonym: Pol Lambda, Dna Polymerase Kappa, Dna Polymerase B Beta2; Ec: 2.7.7.7, 4.2.99.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Strain: Bl21(De3)Rilp Gene: Poll Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Pet
Molecule: 5'-D(Cpgpgpcpapapaptpapcptpg)-3' Chain: T Engineered: Yes		Synthetic: Yes Other_details: Chemical Synthesis
Molecule: 5'-D(Cpapgptpap(2dt))-3' Chain: P Engineered: Yes		Synthetic: Yes Other_details: Chemical Synthesis
Molecule: 5'-D(Pgpcpcpg)-3' Chain: D Engineered: Yes		Synthetic: Yes Other_details: Chemical Synthesis
symmetry	Space Group: P 21 21 21	R_factor 0.228 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.023 68.328 137.850 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	2DT, D3T, EDO, MG, NA	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (3hwt.pdb1.gz) 65 Kb LPC: Ligand-Protein Contacts for 3HWT CSU: Contacts of Structural Units for 3HWT Structure Factors (586 Kb) Retrieve 3HWT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HWT from S2C, [Save to disk] Re-refined 3hwt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HWT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HWT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HWT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hwt_A] [3hwt_T] [3hwt_P] [3hwt] [3hwt_D] SWISS-PROT database: [Q9UGP5] Domain organization of [DPOLL_HUMAN] by SWISSPFAM Domains found in 3HWT: [HhH1] [POLXc ] by SMART

Other resources with information on 3HWT

Community annotation for 3HWT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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