3HYD Protein Fibril date Jun 22, 2009
title Lvealyl Peptide Derived From Human Insulin Chain B, Residues
authors M.I.Ivanova, M.R.Sawaya, D.Eisenberg
compound source
Molecule: Insulin
Chain: A
Fragment: Unp Residues 34-41 Of Chain B
Synonym: Insulin B Chain
Engineered: Yes
Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.146 R_Free 0.180
length a length b length c angle alpha angle beta angle gamma
49.478 4.838 19.442 90.00 96.65 90.00
method X-Ray Diffractionresolution 1.00 Å
Primary referenceMolecular basis for insulin fibril assembly., Ivanova MI, Sievers SA, Sawaya MR, Wall JS, Eisenberg D, Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):18990-5. Epub 2009 Oct 28. PMID:19864624
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (3hyd.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 3HYD
  • Structure Factors (35 Kb)
  • Retrieve 3HYD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HYD from S2C, [Save to disk]
  • Re-refined 3hyd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HYD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HYD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HYD, from MSDmotif at EBI
  • Fold representative 3hyd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hyd_A] [3hyd]
  • SWISS-PROT database: [P01308]
  • Domain organization of [INS_HUMAN] by SWISSPFAM
  • Other resources with information on 3HYD
  • Community annotation for 3HYD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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