3HYY Chaperone date Jun 23, 2009
title Crystal Structure Of Hsp90 With Fragment 37-D04
authors J.Barker, O.Mather, R.K.Y.Cheng, S.Palan, B.Felicetti, M.Whittake
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Nucleotide Binding Domain
Synonym: Hsp 86, Renal Carcinoma Antigen Ny-Ren-38
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: I 2 2 2
R_factor 0.192 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.936 90.604 98.765 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 37D enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3hyy.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (3hyy.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3HYY
  • CSU: Contacts of Structural Units for 3HYY
  • Structure Factors (370 Kb)
  • Retrieve 3HYY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HYY from S2C, [Save to disk]
  • Re-refined 3hyy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HYY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HYY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HYY, from MSDmotif at EBI
  • Fold representative 3hyy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hyy] [3hyy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3HYY: [HATPase_c ] by SMART
  • Other resources with information on 3HYY
  • Community annotation for 3HYY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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