3HYY Chaperone date Jun 23, 2009
title Crystal Structure Of Hsp90 With Fragment 37-D04
authors J.Barker, O.Mather, R.K.Y.Cheng, S.Palan, B.Felicetti, M.Whittake
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Nucleotide Binding Domain
Synonym: Hsp 86, Renal Carcinoma Antigen Ny-Ren-38
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: I 2 2 2
R_factor 0.192 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.936 90.604 98.765 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 37D enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3hyy.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (3hyy.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3HYY
  • CSU: Contacts of Structural Units for 3HYY
  • Structure Factors (370 Kb)
  • Retrieve 3HYY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HYY from S2C, [Save to disk]
  • Re-refined 3hyy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HYY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HYY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HYY, from MSDmotif at EBI
  • Fold representative 3hyy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hyy] [3hyy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3HYY with the sequences similar proteins can be viewed for 3HYY's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3HYY
  • Community annotation for 3HYY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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