3I02 Immune System date Jun 24, 2009
title Crystal Structure Of S54-10 Antibody In Complex With Antigen Kdo(2.4)Kdo
authors C.L.Brooks, S.Muller-Loennies, S.N.Borisova, L.Brade, P.Kosma, T. C.R.Mackenzie, H.Brade, S.V.Evans
compound source
Molecule: Immunoglobulin Light Chain
Chain: A, C
Other_details: S54-10 Fab Light Chain
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Strain: Balbc
Other_details: Ascites

Molecule: Immunoglobulin Heavy Chain
Chain: B, D
Other_details: S54-10 Fab Heavy Chain
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Strain: Balbc
Other_details: Ascites
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.980 53.360 142.230 90.00 102.13 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand KDA, KDO enzyme
Primary referenceAntibodies Raised Against Chlamydial Lipopolysaccharide Antigens Reveal Convergence in Germline Gene Usage and Differential Epitope Recognition., Brooks CL, Muller-Loennies S, Borisova SN, Brade L, Kosma P, Hirama T, Mackenzie CR, Brade H, Evans SV, Biochemistry. 2009 Dec 31. PMID:20000757
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (3i02.pdb1.gz) 74 Kb
  • Biological Unit Coordinates (3i02.pdb2.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 3I02
  • CSU: Contacts of Structural Units for 3I02
  • Structure Factors (201 Kb)
  • Retrieve 3I02 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I02 from S2C, [Save to disk]
  • Re-refined 3i02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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    • Visual 3D analysis of 3I02
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I02, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i02_D] [3i02_C] [3i02] [3i02_B] [3i02_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3I02: [IG_like] [IGv ] by SMART
    • Other resources with information on 3I02
  • Community annotation for 3I02 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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