3I06 Hydrolase date Jun 24, 2009
title Crystal Structure Of Cruzain Covalently Bound To A Purine Ni
authors R.S.Ferreira, B.K.Shoichet, J.H.Mckerrow
compound source
Molecule: Cruzipain
Chain: A
Fragment: Resudues 123-337
Synonym: Cruzaine, Major Cysteine Proteinase
Ec: 3.4.22.51
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi
Organism_taxid: 5693
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.119 R_Free 0.142
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.967 82.967 101.895 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.10 Å
ligand QL2 BindingDB enzyme Hydrolase E.C.3.4.22.51 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification and Optimization of Inhibitors of Trypanosomal Cysteine Proteases: Cruzain, Rhodesain, and TbCatB., Mott BT, Ferreira RS, Simeonov A, Jadhav A, Ang KK, Leister W, Shen M, Silveira JT, Doyle PS, Arkin MR, McKerrow JH, Inglese J, Austin CP, Thomas CJ, Shoichet BK, Maloney DJ, J Med Chem. 2009 Nov 12. PMID:19908842
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (3i06.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 3I06
  • CSU: Contacts of Structural Units for 3I06
  • Structure Factors (1096 Kb)
  • Retrieve 3I06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I06 from S2C, [Save to disk]
  • Re-refined 3i06 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3I06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3I06
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I06, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i06] [3i06_A]
  • SWISS-PROT database: [P25779]
  • Domain organization of [CYSP_TRYCR] by SWISSPFAM
  • Domain found in 3I06: [Pept_C1 ] by SMART
  • Other resources with information on 3I06
  • Community annotation for 3I06 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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