3I07 Oxidoreductase date Jun 24, 2009
title Crystal Structure Of A Putative Organic Hydroperoxide Resist Protein From Vibrio Cholerae O1 Biovar Eltor Str. N16961
authors B.Nocek, N.Maltseva, K.Kwon, W.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Organic Hydroperoxide Resistance Protein
Chain: A, B
Engineered: Yes
Organism_scientific: Vibrio Cholerae O1 Biovar El Tor
Organism_taxid: 243277
Strain: N16961
Gene: Vc_a1006
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.165 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.026 76.154 79.690 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand GOL, MES enzyme
Gene VC
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3i07.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 3I07
  • CSU: Contacts of Structural Units for 3I07
  • Structure Factors (506 Kb)
  • Retrieve 3I07 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I07 from S2C, [Save to disk]
  • Re-refined 3i07 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3I07 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3I07
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I07, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i07_B] [3i07_A] [3i07]
  • SWISS-PROT database: [Q9KKU4]
  • Domain organization of [Q9KKU4_VIBCH] by SWISSPFAM
  • Other resources with information on 3I07
  • Community annotation for 3I07 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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