3I2N Transcription date Jun 29, 2009
title Crystal Structure Of Wd40 Repeats Protein Wdr92
authors M.F.Amaya, Z.Li, H.He, A.Seitova, S.Ni, A.M.Edwards, C.H.Arrowsmit J.Weigelt, C.Bountra, A.Bochkarev, J.Min, H.Ouyang, Structural G Consortium (Sgc)
compound source
Molecule: Wd Repeat-Containing Protein 92
Chain: A
Synonym: Wd Repeat-Containing Protein Monad
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr92
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43
R_factor 0.226 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.052 70.052 84.656 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and function of WD40 domain proteins., Xu C, Min J, Protein Cell. 2011 Mar;2(3):202-14. Epub 2011 Apr 6. PMID:21468892
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3i2n.pdb1.gz) 54 Kb
  • CSU: Contacts of Structural Units for 3I2N
  • Structure Factors (213 Kb)
  • Retrieve 3I2N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I2N from S2C, [Save to disk]
  • Re-refined 3i2n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3I2N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3I2N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I2N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i2n] [3i2n_A]
  • SWISS-PROT database: [Q96MX6]
  • Domain organization of [WDR92_HUMAN] by SWISSPFAM
  • Domain found in 3I2N: [WD40 ] by SMART
  • Other resources with information on 3I2N
  • Community annotation for 3I2N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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