3I4R Protein Transport date Jul 02, 2009
title Nup107(Aa658-925)Nup133(Aa517-1156) Complex, H.Sapiens
authors J.R.R.Whittle, T.U.Schwartz
compound source
Molecule: Nuclear Pore Complex Protein Nup107
Chain: A
Fragment: C-Terminal Fragment (Unp Residues 658-925)
Synonym: Nucleoporin Nup107, 107 Kda Nucleoporin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nup107
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Duet

Molecule: Nuclear Pore Complex Protein Nup133
Chain: B
Fragment: Helical Domain (Unp Residues 517-1156)
Synonym: Nucleoporin Nup133, 133 Kda Nucleoporin
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nup133
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Duet
symmetry Space Group: P 21 21 21
R_factor 0.315 R_Free 0.370
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.554 133.047 176.303 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.53 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceArchitectural nucleoporins Nup157/170 and Nup133 are structurally related and descend from a second ancestral element., Whittle JR, Schwartz TU, J Biol Chem. 2009 Oct 9;284(41):28442-52. Epub 2009 Aug 11. PMID:19674973
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (237 Kb) [Save to disk]
  • Biological Unit Coordinates (3i4r.pdb1.gz) 228 Kb
  • CSU: Contacts of Structural Units for 3I4R
  • Structure Factors (275 Kb)
  • Retrieve 3I4R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I4R from S2C, [Save to disk]
  • Re-refined 3i4r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3I4R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3I4R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3I4R, from MSDmotif at EBI
  • Fold representative 3i4r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i4r_A] [3i4r_B] [3i4r]
  • SWISS-PROT database: [P57740] [Q8WUM0]
  • Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB.
  • Domain organization of [NU107_HUMAN] [NU133_HUMAN] by SWISSPFAM
  • Other resources with information on 3I4R
  • Community annotation for 3I4R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science