3I5Q	Protein Transport	date	Jul 06, 2009
title	Nup170(Aa1253-1502) At 2.2 A, S.Cerevisiae
authors	J.R.R.Whittle, T.U.Schwartz
compound		source
Molecule: Nucleoporin Nup170 Chain: B, A Fragment: C-Terminal Fragment (Unp Residues 1253-1502) Synonym: Nuclear Pore Protein Nup170 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast Organism_taxid: 4932 Gene: Nle3, Nup170, Ybl0725, Ybl079w Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-Duet
symmetry	Space Group: I 2 2 2	R_factor 0.232 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.432 113.005 150.885 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	Architectural nucleoporins Nup157/170 and Nup133 are structurally related and descend from a second ancestral element., Whittle JR, Schwartz TU, J Biol Chem. 2009 Oct 9;284(41):28442-52. Epub 2009 Aug 11. PMID:19674973

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (3i5q.pdb1.gz) 46 Kb Biological Unit Coordinates (3i5q.pdb2.gz) 45 Kb Biological Unit Coordinates (3i5q.pdb3.gz) 177 Kb Biological Unit Coordinates (3i5q.pdb4.gz) 89 Kb CSU: Contacts of Structural Units for 3I5Q Structure Factors (551 Kb) Retrieve 3I5Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3I5Q from S2C, [Save to disk] Re-refined 3i5q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3I5Q in 3D

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Visual 3D analysis of 3I5Q

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3I5Q, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3i5q_B] [3i5q] [3i5q_A] SWISS-PROT database: [P38181] Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB. Domain organization of [NU170_YEAST] by SWISSPFAM

Other resources with information on 3I5Q

Community annotation for 3I5Q at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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