3I61	Hydrolase Rna	date	Jul 06, 2009
title	Structure Of Mss116p Bound To Ssrna And Adp-Beryllium Fluori
authors	M.Del Campo, A.M.Lambowitz
compound		source
Molecule: Atp-Dependent Rna Helicase Mss116 Chain: A Fragment: Unp Residues 37 To 597 Ec: 3.6.1.- Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Yeast Organism_taxid: 4932 Gene: Mss116, Yd9346.05c, Ydr194c Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmal
Molecule: 5'-R(Upupupupupupupupupu)-3' Chain: B Engineered: Yes		Synthetic: Yes Other_details: Rna Fragment Commercially Available
symmetry	Space Group: P 21 21 2	R_factor 0.186 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.294 126.082 55.721 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	ADP, BEF, MG	enzyme	Hydrolase E.C.3.6.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the Yeast DEAD box protein Mss116p reveals two wedges that crimp RNA., Del Campo M, Lambowitz AM, Mol Cell. 2009 Sep 11;35(5):598-609. PMID:19748356

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (3i61.pdb1.gz) 87 Kb LPC: Ligand-Protein Contacts for 3I61 CSU: Contacts of Structural Units for 3I61 Structure Factors (526 Kb) Retrieve 3I61 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3I61 from S2C, [Save to disk] Re-refined 3i61 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3I61 in 3D

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Visual 3D analysis of 3I61

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3I61, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3i61] [3i61_B] [3i61_A] SWISS-PROT database: [P15424] Domain organization of [MS116_YEAST] by SWISSPFAM Domains found in 3I61: [DEXDc] [HELICc ] by SMART

Other resources with information on 3I61

Community annotation for 3I61 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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