3I79 Transferase date Jul 08, 2009
title Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (T
authors E.T.Larson, E.A.Merritt, Medical Structural Genomics Of Pathog Protozoa (Msgpp)
compound source
Molecule: Calmodulin-Domain Protein Kinase 1
Chain: A
Fragment: Residues 30-507
Ec: 2.7.11.17
Engineered: Yes
Organism_scientific: Toxoplasma Gondii
Organism_taxid: 5811
Gene: Cdpk1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ava0421
symmetry Space Group: P 1 21 1
R_factor 0.213 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.144 71.861 67.265 90.00 102.98 90.00
method X-Ray Diffractionresolution 2.04 Å
ligand EDO enzyme Transferase E.C.2.7.11.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceToxoplasma gondii calcium-dependent protein kinase 1 is a target for selective kinase inhibitors., Ojo KK, Larson ET, Keyloun KR, Castaneda LJ, Derocher AE, Inampudi KK, Kim JE, Arakaki TL, Murphy RC, Zhang L, Napuli AJ, Maly DJ, Verlinde CL, Buckner FS, Parsons M, Hol WG, Merritt EA, Van Voorhis WC, Nat Struct Mol Biol. 2010 May;17(5):602-7. Epub 2010 May 2. PMID:20436472
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (3i79.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 3I79
  • CSU: Contacts of Structural Units for 3I79
  • Structure Factors (1839 Kb)
  • Retrieve 3I79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I79 from S2C, [Save to disk]
  • Re-refined 3i79 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3I79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3I79
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3I79, from MSDmotif at EBI
  • Fold representative 3i79 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i79_A] [3i79]
  • SWISS-PROT database: [Q9BJF5]
  • Domain organization of [Q9BJF5_TOXGO] by SWISSPFAM
  • Domains found in 3I79: [EFh] [S_TKc ] by SMART
  • Other resources with information on 3I79
  • Community annotation for 3I79 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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