3I7C	Transferase	date	Jul 08, 2009
title	Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (T Complex With Bumped Kinase Inhibitor Na-Pp2
authors	E.T.Larson, E.A.Merritt, Medical Structural Genomics Of Pathog Protozoa (Msgpp)
compound		source
Molecule: Calmodulin-Domain Protein Kinase 1 Chain: A Fragment: Residues 30-507 Ec: 2.7.11.17 Engineered: Yes		Organism_scientific: Toxoplasma Gondii Organism_taxid: 5811 Gene: Cdpk1, Tgcdpk1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ava0421
symmetry	Space Group: P 1 21 1	R_factor 0.193 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.139 72.522 67.116 90.00 103.76 90.00
method	X-Ray Diffraction	resolution	1.98 Å
ligand	BK2, MSE BindingDB	enzyme	Transferase E.C.2.7.11.17 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Toxoplasma gondii calcium-dependent protein kinase 1 is a target for selective kinase inhibitors., Ojo KK, Larson ET, Keyloun KR, Castaneda LJ, Derocher AE, Inampudi KK, Kim JE, Arakaki TL, Murphy RC, Zhang L, Napuli AJ, Maly DJ, Verlinde CL, Buckner FS, Parsons M, Hol WG, Merritt EA, Van Voorhis WC, Nat Struct Mol Biol. 2010 May;17(5):602-7. Epub 2010 May 2. PMID:20436472

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk] Biological Unit Coordinates (3i7c.pdb1.gz) 80 Kb LPC: Ligand-Protein Contacts for 3I7C CSU: Contacts of Structural Units for 3I7C Structure Factors (1311 Kb) Retrieve 3I7C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3I7C from S2C, [Save to disk] Re-refined 3i7c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3I7C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3I7C

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3I7C, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3i7c] [3i7c_A] SWISS-PROT database: [Q9BJF5] Domain organization of [Q9BJF5_TOXGO] by SWISSPFAM Domains found in 3I7C: [EFh] [S_TKc ] by SMART

Other resources with information on 3I7C

Community annotation for 3I7C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---