3I8O Rna Binding Protein date Jul 09, 2009
title A Domain Of A Functionally Unknown Protein From Methanocaldo Jannaschii Dsm 2661.
authors K.Tan, G.Chhor, G.Cobb, A.Joachimiak, Midwest Center For Structu Genomics (Mcsg)
compound source
Molecule: Kh Domain-Containing Protein Mj1533
Chain: A
Fragment: Residues 27-165
Engineered: Yes
 Organism_scientific: Methanocaldococcus Jannaschii
Organism_taxid: 2190
Strain: Dsm 2661
Gene: Methanocaldococcus Jannaschii
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ppk1037
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: I 4 2 2
R_factor 0.192 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.988 87.988 96.450 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.64 Å
ligand ACT, CL, FMT, MSE, PEG enzyme
note 3I8O is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3i8o.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (3i8o.pdb2.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3I8O
  • CSU: Contacts of Structural Units for 3I8O
  • Likely Quarternary Molecular Structure file(s) for 3I8O
  • Structure Factors (114 Kb)
  • Retrieve 3I8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I8O from S2C, [Save to disk]
  • Re-refined 3i8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3I8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3I8O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I8O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i8o] [3i8o_A]
  • SWISS-PROT database: [Q58928]
  • Domain organization of [Y1533_METJA] by SWISSPFAM
  • Domain found in 3I8O: [PINc ] by SMART
    • Other resources with information on 3I8O
  • Community annotation for 3I8O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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