3IB3 Hydrolase date Jul 15, 2009
title Crystal Structure Of Sacol2612 - Cocenond Family Hydrolase Staphylococcus Aureus
authors M.J.Domagalski, M.Chruszcz, T.Osinski, T.Skarina, O.Onopriyenko, M.Cymborowski, I.A.Shumilin, A.Savchenko, A.Edwards, W.Anderson Center For Structural Genomics Of Infectious Diseases (Csgi
compound source
Molecule: Cocenond Family Hydrolase
Chain: A, B
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93062
Strain: Col
Gene: Sacol2612
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19c
symmetry Space Group: C 2 2 21
R_factor 0.191 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.221 160.583 216.827 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand CL, MSE, NI, PLM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • dipeptidyl-peptidase activit...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (3ib3.pdb1.gz) 98 Kb
  • Biological Unit Coordinates (3ib3.pdb2.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 3IB3
  • CSU: Contacts of Structural Units for 3IB3
  • Structure Factors (1151 Kb)
  • Retrieve 3IB3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IB3 from S2C, [Save to disk]
  • Re-refined 3ib3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3IB3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3IB3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IB3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ib3_B] [3ib3] [3ib3_A]
  • SWISS-PROT database: [Q5HCV6]
  • Domain organization of [Q5HCV6_STAAC] by SWISSPFAM
  • Domain found in 3IB3: [PepX_C ] by SMART
    • Other resources with information on 3IB3
  • Community annotation for 3IB3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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