3IC6 Structural Genomics, Unknown Function date Jul 17, 2009
title Crystal Structure Of Putative Methylase Family Protein From Gonorrhoeae
authors C.Chang, N.Marshall, G.Cobb, A.Joachimiak, Midwest Center For St Genomics (Mcsg)
compound source
Molecule: Putative Methylase Family Protein
Chain: A
Engineered: Yes
 Organism_scientific: Neisseria Gonorrhoeae Fa 1090
Organism_taxid: 242231
Gene: Ngo0670
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: P 65 2 2
R_factor 0.209 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.123 73.123 193.315 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.59 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (3ic6.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 3IC6
  • CSU: Contacts of Structural Units for 3IC6
  • Structure Factors (233 Kb)
  • Retrieve 3IC6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IC6 from S2C, [Save to disk]
  • Re-refined 3ic6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3IC6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3IC6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IC6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ic6_A] [3ic6]
  • SWISS-PROT database: [Q5F8U0]
  • Domain organization of [Q5F8U0_NEIG1] by SWISSPFAM
    • Other resources with information on 3IC6
  • Community annotation for 3IC6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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