3ID5	Transferase Ribosomal Protein Rna	date	Jul 20, 2009
title	Crystal Structure Of Sulfolobus Solfataricus Cd Rnp Assembl Nop5, Fibrillarin, L7ae And A Split Half Cd Rna
authors	K.Ye
compound		source
Molecule: Pre Mrna Splicing Protein Chain: A, E Fragment: Residues 1-380 Synonym: Nop5 Engineered: Yes Mutation: Yes		Organism_scientific: Sulfolobus Solfataricus Organism_taxid: 2287 Gene: Sso0939 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Ril+ Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: Fibrillarin-Like Rrnatrna 2'-O-Methyltransferase Chain: B, F Synonym: Fibrillarin, Fib Ec: 2.1.1.- Engineered: Yes Mutation: Yes		Organism_scientific: Sulfolobus Solfataricus Organism_taxid: 2287 Gene: Flpa, Sso0940, C33_014 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Ril+ Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: 50s Ribosomal Protein L7ae Chain: C, G Engineered: Yes Mutation: Yes		Organism_scientific: Sulfolobus Solfataricus Organism_taxid: 2287 Gene: Rpl7ae, Sso0091, C04_031 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Ril+ Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: Half Cd Rna Chain: D, H Engineered: Yes		Synthetic: Yes Other_details: Prepared By In Vitro Transcription
symmetry	Space Group: P 41 21 2	R_factor 0.285 R_Free 0.304
crystal cell	length a length b length c angle alpha angle beta angle gamma 265.485 265.485 129.434 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	4.01 Å
ligand	SAM	enzyme	Transferase E.C.2.1.1 BRENDA
Gene	C04 ; C33
Gene Ontology	Chain Function Process Component A, E C, G ribonuclease P activity F, B
Primary reference	Structural organization of box C/D RNA-guided RNA methyltransferase., Ye K, Jia R, Lin J, Ju M, Peng J, Xu A, Zhang L, Proc Natl Acad Sci U S A. 2009 Aug 5. PMID:19666563

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (259 Kb) [Save to disk] Biological Unit Coordinates (3id5.pdb1.gz) 245 Kb LPC: Ligand-Protein Contacts for 3ID5 CSU: Contacts of Structural Units for 3ID5 Structure Factors (312 Kb) Retrieve 3ID5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ID5 from S2C, [Save to disk] Re-refined 3id5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ID5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ID5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ID5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3id5_A] [3id5_G] [3id5_B] [3id5_H] [3id5_F] [3id5_E] [3id5] [3id5_D] [3id5_C] SWISS-PROT database: [P58032] [Q97ZH3] [P55858] Domain organization of [FLPA_SULSO] [Q97ZH3_SULSO] [RL7A_SULSO] by SWISSPFAM Domains found in 3ID5: [Fibrillarin] [NOSIC ] by SMART

Other resources with information on 3ID5

Community annotation for 3ID5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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