3IDH Transferase date Jul 21, 2009
title Human Pancreatic Glucokinase In Complex With Glucose
authors P.Petit, L.Gluais, A.Lagarde, J.A.Boutin, G.Ferry, L.Vuillard
compound source
Molecule: Glucokinase
Chain: A
Fragment: Unp Residues 12-465
Synonym: Hexokinase Type Iv, Hk Iv, Hexokinase-4, Hk4, Hexo
Ec: 2.7.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.510 81.970 86.950 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.14 Å
ligand GLC, K enzyme Transferase E.C.2.7.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe active conformation of human glucokinase is not altered by allosteric activators., Petit P, Antoine M, Ferry G, Boutin JA, Lagarde A, Gluais L, Vincentelli R, Vuillard L, Acta Crystallogr D Biol Crystallogr. 2011 Nov;67(Pt 11):929-35. Epub 2011 Oct 19. PMID:22101819
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (3idh.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 3IDH
  • CSU: Contacts of Structural Units for 3IDH
  • Structure Factors (1327 Kb)
  • Retrieve 3IDH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IDH from S2C, [Save to disk]
  • Re-refined 3idh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IDH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IDH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3IDH, from MSDmotif at EBI
  • Fold representative 3idh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3idh_A] [3idh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3IDH with the sequences similar proteins can be viewed for 3IDH's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3IDH
  • Community annotation for 3IDH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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