OCA Atlas for 3IDY

3IDY

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

NAG, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, G

Primary reference

Structural basis of immune evasion at the site of CD4 attachment on HIV-1 gp120., Chen L, Do Kwon Y, Zhou T, Wu X, O'Dell S, Cavacini L, Hessell AJ, Pancera M, Tang M, Xu L, Yang ZY, Zhang MY, Arthos J, Burton DR, Dimitrov DS, Nabel GJ, Posner MR, Sodroski J, Wyatt R, Mascola JR, Kwong PD, Science. 2009 Nov 20;326(5956):1123-7. PMID:19965434

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (515 Kb) [Save to disk]

Biological Unit Coordinates (3idy.pdb1.gz) 506 Kb

Biological Unit Coordinates (3idy.pdb2.gz) 506 Kb

LPC: Ligand-Protein Contacts for 3IDY

CSU: Contacts of Structural Units for 3IDY

Structure Factors (513 Kb)

Retrieve 3IDY in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3IDY from S2C, [Save to disk]

Re-refined 3idy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IDY in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3idy] [3idy_A] [3idy_B] [3idy_C] [3idy_G] [3idy_H] [3idy_L]

SWISS-PROT database: [P04578]

Belongs to the human immunodeficiency virus type 1 (hiv-1) fusion peptide (hiv-fp) family

according to TCDB.

Domains found in 3IDY: [IG_like] [IGv ] by SMART

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