3IF7 Calcium Binding Protein date Jul 24, 2009
title Structure Of Calmodulin Complexed With Its First Endogenous Sphingosylphosphorylcholine
authors E.Kovacs, V.Harmat, J.Toth, B.G.Vertessy, K.Modos, J.Kardos, K.Lil
compound source
Molecule: Calmodulin
Chain: A
Synonym: Cam
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Tissue: Brain
symmetry Space Group: P 32 2 1
R_factor 0.192 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.669 39.669 170.340 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand CA, SPU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • enzyme regulator activity


    • Primary referenceStructure and mechanism of calmodulin binding to a signaling sphingolipid reveal new aspects of lipid-protein interactions., Kovacs E, Harmat V, Toth J, Vertessy BG, Modos K, Kardos J, Liliom K, FASEB J. 2010 Jun 14. PMID:20522785
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (3if7.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 3IF7
  • CSU: Contacts of Structural Units for 3IF7
  • Structure Factors (290 Kb)
  • Retrieve 3IF7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IF7 from S2C, [Save to disk]
  • Re-refined 3if7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3IF7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3IF7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IF7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3if7] [3if7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3IF7: [EFh ] by SMART
    • Other resources with information on 3IF7
  • Community annotation for 3IF7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science