| Data retrieval |
- Asymmetric unit, PDB entry:
[header only] [complete with coordinates] (16 Kb) [Save to disk]
 - Biological Unit Coordinates (3ifd.pdb1.gz) 23 Kb
- LPC: Ligand-Protein Contacts for 3IFD
- CSU: Contacts of Structural Units for 3IFD
- Structure Factors (42 Kb)
- Retrieve 3IFD in mmCIF format [Save to disk]
- SEQRES to COORDINATES
correlation for 3IFD
from S2C,
[Save to disk]
- Re-refined 3ifd structure
from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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| View 3IFD in 3D |
-
Proteopedia, because life has more than 2D.
- On Jmol, a nice Rasmol like molecule viewer.
This is good for easiest viewing of basic structure.
- On FirstGlance, an
excellent tool for a guided tour on the structure components, by
E. Martz.
- On AstexViewer, from
MSD-EBI
(viewer documentation).
- On RasMol
(Install RasMol freeware)
Here's help on
how to use RasMol.
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| Visual 3D analysis of 3IFD |
- Cartoon
representation from PDB Cartoon
- Ramachandran
plot from PDBSum
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| Structure-derived information |
- Electron Density
related parameters from EDS Electron Density Server, at Upsala
- Dipole moment, from Dipole Server at Weizmann Institute
- Crystal Contacts, from CryCo at Weizmann Institute
- 3D motif for 3IFD,
from MSDmotif at EBI
- Fold representative 3ifd from FSSP and Dali (Families of Structurally Similar Proteins)
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| Sequence-derived information |
- View one-letter amino acid or nucleotide sequence for each chain: [3ifd_A]
- SWISS-PROT database: [P13500]
- Domain organization of [CCL2_HUMAN] by SWISSPFAM
- Domain found in 3IFD: [SCY
] by SMART
- Alignments of the sequence of 3IFD with the sequences
similar proteins can be viewed for 3IFD's classification [CCL2_HUMAN] at ProtoMap.
Click on "Neighbors List", then on the "See Alignments" button below the list.
- A sequence distance tree ("phylogenetic tree")
can be viewed for 1ACL's classification [CCL2_HUMAN] at ProtoMap. Click on the Cluster number.
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Other resources with information on 3IFD |
- Community annotation for 3IFD at PDBWiki (http://pdbwiki.org)
- MMDB (Entrez's Structure Database)
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| Movements, Movies and Images |
- Images
from IMB Jena Image Library
of Biological Macromolecules.
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